Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-substituted formamide deformylase | EQ875_01303 | Not Available | Negative | 1444195 - 1445862 | 62834.6 |
| hypothetical protein | EQ875_01304 | Not Available | Negative | 1445899 - 1446729 | 30691.9 |
| hth-type transcriptional regulator syrm 1 | EQ875_01305 | Not Available | Negative | 1446847 - 1447761 | 34995.8 |
| cinnamate reductase | EQ875_01306 | Not Available | Positive | 1448059 - 1450080 | 74049.5 |
| hypothetical protein | EQ875_01307 | Not Available | Negative | 1450159 - 1450686 | 19209.7 |
| hypothetical protein | EQ875_01308 | Not Available | Positive | 1450996 - 1451286 | 10786.9 |
| hypothetical protein | EQ875_01309 | Not Available | Negative | 1451515 - 1451835 | 11482.8 |
| hypothetical protein | EQ875_01310 | Not Available | Negative | 1451863 - 1452207 | 13115.5 |
| n-acetylmuramic acid 6-phosphate etherase | EQ875_01311 | Not Available | Negative | 1452401 - 1453297 | 31271.9 |
| membrane-bound lytic murein transglycosylase f | EQ875_01312 | Not Available | Positive | 1453505 - 1454971 | 56322.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


