Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00035 | Not Available | Positive | 37210 - 39465 | 83326.5 |
| hypothetical protein | EQ875_00036 | Not Available | Positive | 39495 - 41132 | 60949.5 |
| phosphate import atp-binding protein pstb 3 | EQ875_00037 | Not Available | Positive | 41159 - 41977 | 30381.5 |
| phosphate-specific transport system accessory protein phou | EQ875_00038 | Not Available | Positive | 41992 - 42702 | 26731.4 |
| hypothetical protein | EQ875_00039 | Not Available | Negative | 42873 - 43481 | 21406.0 |
| copper homeostasis protein cutc | EQ875_00040 | Not Available | Negative | 43772 - 44509 | 26391.1 |
| alkyl hydroperoxide reductase c | EQ875_00041 | Not Available | Negative | 44766 - 45374 | 22309.4 |
| hydrogen peroxide-inducible genes activator | EQ875_00042 | Not Available | Positive | 45505 - 46401 | 33050.1 |
| malate synthase a | EQ875_00043 | Not Available | Positive | 47059 - 48663 | 60567.3 |
| isocitrate lyase | EQ875_00044 | Not Available | Positive | 48735 - 50042 | 47940.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


