Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative l,d-transpeptidase ynhg | EQ875_01273 | Not Available | Negative | 1411546 - 1412448 | 32984.6 |
| hypothetical protein | EQ875_01274 | Not Available | Negative | 1412633 - 1413103 | 18360.1 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | EQ875_01275 | Not Available | Positive | 1413218 - 1414231 | 38307.9 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | EQ875_01276 | Not Available | Positive | 1414231 - 1414851 | 23733.3 |
| hypothetical protein | EQ875_01277 | Not Available | Positive | 1414938 - 1415555 | 24147.3 |
| multidrug export protein mepa | EQ875_01278 | Not Available | Positive | 1415645 - 1417003 | 49421.8 |
| atrazine chlorohydrolase | EQ875_01279 | Not Available | Positive | 1417226 - 1418623 | 50939.6 |
| hypothetical protein | EQ875_01280 | Not Available | Negative | 1419108 - 1419455 | 13387.8 |
| hypothetical protein | EQ875_01281 | Not Available | Negative | 1419586 - 1420398 | 31256.0 |
| hypothetical protein | EQ875_01282 | Not Available | Positive | 1421236 - 1421754 | 19316.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


