Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulatory protein walr | EQ875_01223 | Not Available | Negative | 1355112 - 1355771 | 24677.7 |
| hypothetical protein | EQ875_01224 | Not Available | Negative | 1355746 - 1357188 | 55070.7 |
| nad(p) transhydrogenase subunit beta | EQ875_01225 | Not Available | Negative | 1357379 - 1358755 | 48513.8 |
| nad(p) transhydrogenase subunit alpha | EQ875_01226 | Not Available | Negative | 1358766 - 1360502 | 62292.5 |
| hypothetical protein | EQ875_01227 | Not Available | Negative | 1360867 - 1361148 | 10593.9 |
| hypothetical protein | EQ875_01228 | Not Available | Negative | 1361239 - 1361430 | 7252.8 |
| hypothetical protein | EQ875_01229 | Not Available | Positive | 1362056 - 1362148 | 3434.45 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | EQ875_01230 | Not Available | Positive | 1362306 - 1362959 | 23594.3 |
| nad 5'-nucleotidase | EQ875_01231 | Not Available | Negative | 1363102 - 1364862 | 64211.7 |
| lactoylglutathione lyase | EQ875_01232 | Not Available | Negative | 1365231 - 1365626 | 15201.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


