Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b561 | EQ875_01203 | Not Available | Negative | 1337158 - 1337700 | 20655.5 |
| hypothetical protein | EQ875_01204 | Not Available | Positive | 1337827 - 1338285 | 16442.5 |
| hypothetical protein | EQ875_01205 | Not Available | Negative | 1338341 - 1338694 | 13868.3 |
| tyrosine recombinase xerc | EQ875_01206 | Not Available | Positive | 1338982 - 1340388 | 53934.8 |
| divalent metal cation transporter mnth | EQ875_01207 | Not Available | Negative | 1340445 - 1341692 | 44596.9 |
| rna polymerase sigma factor rpos | EQ875_01208 | Not Available | Positive | 1342163 - 1343047 | 33522.0 |
| hypothetical protein | EQ875_01209 | Not Available | Positive | 1343247 - 1343465 | 8316.37 |
| putative chromate transport protein | EQ875_01210 | Not Available | Negative | 1343565 - 1344719 | 41156.6 |
| hth-type transcriptional regulator dmlr | EQ875_01211 | Not Available | Positive | 1344944 - 1345870 | 35339.5 |
| hypothetical protein | EQ875_01212 | Not Available | Negative | 1345963 - 1347072 | 41990.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


