Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative protein ycih | EQ875_01193 | Not Available | Positive | 1327601 - 1327912 | 11076.6 |
| penicillin acylase | EQ875_01194 | Not Available | Negative | 1327983 - 1329071 | 39338.0 |
| hypothetical protein | EQ875_01195 | Not Available | Negative | 1329171 - 1330391 | 45749.3 |
| hypothetical protein | EQ875_01196 | Not Available | Positive | 1330655 - 1331209 | 21693.3 |
| hypothetical protein | EQ875_01197 | Not Available | Positive | 1331609 - 1331725 | 4369.55 |
| hypothetical protein | EQ875_01198 | Not Available | Negative | 1331746 - 1332033 | 11260.3 |
| sodium/glucose cotransporter | EQ875_01199 | Not Available | Positive | 1332576 - 1334111 | 54477.1 |
| l-aspartate oxidase | EQ875_01200 | Not Available | Positive | 1334086 - 1335744 | 61533.2 |
| hypothetical protein | EQ875_01201 | Not Available | Positive | 1335747 - 1336556 | 30950.2 |
| protein ycei | EQ875_01202 | Not Available | Negative | 1336601 - 1337161 | 20353.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


