Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recombination-associated protein rdgc | EQ875_00025 | Not Available | Negative | 22324 - 23238 | 34587.8 |
| hypothetical protein | EQ875_00026 | Not Available | Negative | 23508 - 23900 | 14163.8 |
| nuclease sbccd subunit d | EQ875_00027 | Not Available | Positive | 24388 - 25629 | 46484.6 |
| hypothetical protein | EQ875_00028 | Not Available | Positive | 25635 - 29432 | 142378.0 |
| phosphate regulon transcriptional regulatory protein phob | EQ875_00029 | Not Available | Positive | 29702 - 30391 | 26427.0 |
| phosphate regulon sensor protein phor | EQ875_00030 | Not Available | Positive | 30508 - 31818 | 50278.6 |
| phosphate-binding protein psts | EQ875_00031 | Not Available | Positive | 31818 - 32906 | 39877.1 |
| exopolyphosphatase | EQ875_00032 | Not Available | Negative | 32869 - 34383 | 57281.1 |
| polyphosphate kinase | EQ875_00033 | Not Available | Negative | 34373 - 36430 | 79704.1 |
| hypothetical protein | EQ875_00034 | Not Available | Negative | 36505 - 37026 | 19174.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


