Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein umuc | EQ875_01173 | Not Available | Positive | 1308306 - 1309598 | 48884.7 |
| hypothetical protein | EQ875_01174 | Not Available | Positive | 1309714 - 1309863 | 5453.04 |
| hth-type transcriptional activator rhar | EQ875_01175 | Not Available | Negative | 1309904 - 1310698 | 30706.7 |
| hypothetical protein | EQ875_01176 | Not Available | Negative | 1310797 - 1311276 | 17346.2 |
| hypothetical protein | EQ875_01177 | Not Available | Positive | 1311460 - 1311966 | 19821.7 |
| peptidyl-trna hydrolase arfb | EQ875_01178 | Not Available | Positive | 1312041 - 1312454 | 15570.0 |
| hypothetical protein | EQ875_01179 | Not Available | Negative | 1312507 - 1313514 | 35811.9 |
| hypothetical protein | EQ875_01180 | Not Available | Negative | 1313620 - 1313943 | 11751.2 |
| hypothetical protein | EQ875_01181 | Not Available | Negative | 1313961 - 1314176 | 7905.77 |
| hypothetical protein | EQ875_01182 | Not Available | Negative | 1314252 - 1317530 | 124201.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


