Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01163 | Not Available | Negative | 1298841 - 1299167 | 12073.5 |
| hypothetical protein | EQ875_01164 | Not Available | Positive | 1299318 - 1299815 | 18089.0 |
| adp-ribose pyrophosphatase | EQ875_01165 | Not Available | Negative | 1299810 - 1300328 | 19604.4 |
| hypothetical protein | EQ875_01166 | Not Available | Negative | 1300495 - 1301547 | 39479.1 |
| lipase 1 | EQ875_01167 | Not Available | Negative | 1301659 - 1302588 | 34635.6 |
| udp-glucose 4-epimerase | EQ875_01168 | Not Available | Positive | 1302863 - 1303879 | 36959.7 |
| atp-dependent rna helicase rhle | EQ875_01169 | Not Available | Positive | 1304102 - 1305448 | 51109.8 |
| multidrug resistance protein norm | EQ875_01170 | Not Available | Positive | 1305606 - 1306970 | 49092.3 |
| cell division protein damx | EQ875_01171 | Not Available | Negative | 1307059 - 1307601 | 20010.2 |
| protein umud | EQ875_01172 | Not Available | Positive | 1307883 - 1308290 | 15388.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


