Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_01103 | Not Available | Negative | 1232033 - 1232716 | 26270.2 |
| dipeptide and tripeptide permease b | EQ875_01104 | Not Available | Negative | 1233215 - 1234702 | 54381.9 |
| regulator of nucleoside diphosphate kinase | EQ875_01105 | Not Available | Positive | 1235049 - 1235450 | 14726.0 |
| chaperone protein dnaj | EQ875_01106 | Not Available | Negative | 1235587 - 1236501 | 33439.6 |
| chaperone protein dnak | EQ875_01107 | Not Available | Negative | 1236636 - 1238531 | 68285.8 |
| small heat shock protein ibpa | EQ875_01108 | Not Available | Negative | 1238672 - 1239094 | 16055.0 |
| multidrug resistance protein mdta | EQ875_01109 | Not Available | Positive | 1239604 - 1240839 | 45551.1 |
| multidrug resistance protein mexb | EQ875_01110 | Not Available | Positive | 1240836 - 1243949 | 115978.0 |
| hypothetical protein | EQ875_01111 | Not Available | Negative | 1244019 - 1244801 | 27627.6 |
| hypothetical protein | EQ875_01112 | Not Available | Positive | 1245275 - 1246132 | 32767.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


