Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfur carrier protein fdhd | EQ875_00015 | Not Available | Positive | 13593 - 14441 | 31225.8 |
| penicillin-insensitive murein endopeptidase | EQ875_00016 | Not Available | Positive | 14789 - 15613 | 30580.0 |
| ferredoxin yfhl | EQ875_00017 | Not Available | Negative | 15708 - 15962 | 9411.24 |
| putative protease ydcp | EQ875_00018 | Not Available | Negative | 15968 - 17344 | 51910.8 |
| khg/kdpg aldolase | EQ875_00019 | Not Available | Negative | 17516 - 18160 | 22645.8 |
| dna-3-methyladenine glycosylase 1 | EQ875_00020 | Not Available | Positive | 18340 - 18915 | 22050.6 |
| methylated-dna--protein-cysteine methyltransferase, constitutive | EQ875_00021 | Not Available | Negative | 18912 - 19388 | 17397.0 |
| hypothetical protein | EQ875_00022 | Not Available | Positive | 19621 - 20994 | 50433.2 |
| nadp-dependent 7-alpha-hydroxysteroid dehydrogenase | EQ875_00023 | Not Available | Positive | 21039 - 21836 | 28196.7 |
| hypothetical protein | EQ875_00024 | Not Available | Positive | 21955 - 22272 | 12395.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


