Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive | EQ875_01083 | Not Available | Positive | 1215576 - 1216631 | 38692.3 |
| hypothetical protein | EQ875_01084 | Not Available | Negative | 1216720 - 1216893 | 6586.98 |
| hypothetical protein | EQ875_01085 | Not Available | Positive | 1217139 - 1217630 | 17918.9 |
| hypothetical protein | EQ875_01086 | Not Available | Positive | 1217608 - 1218186 | 21539.8 |
| hypothetical protein | EQ875_01087 | Not Available | Positive | 1218198 - 1218518 | 11780.2 |
| hypothetical protein | EQ875_01088 | Not Available | Positive | 1218605 - 1218784 | 6800.28 |
| peptidoglycan d,d-transpeptidase mrda | EQ875_01089 | Not Available | Positive | 1218982 - 1220940 | 73115.5 |
| hypothetical protein | EQ875_01090 | Not Available | Negative | 1221024 - 1221746 | 26470.2 |
| hypothetical protein | EQ875_01091 | Not Available | Negative | 1221886 - 1222266 | 13946.0 |
| hypothetical protein | EQ875_01092 | Not Available | Negative | 1222427 - 1222579 | 5681.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


