Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative protein yyce | EQ875_01041 | Not Available | Positive | 1172502 - 1172897 | 15236.1 |
| hypothetical protein | EQ875_01042 | Not Available | Negative | 1172932 - 1173612 | 26489.2 |
| hypothetical protein | EQ875_01043 | Not Available | Positive | 1174189 - 1174557 | 13828.1 |
| nitrate reductase | EQ875_01044 | Not Available | Positive | 1174923 - 1179080 | 152136.0 |
| hypothetical protein | EQ875_01045 | Not Available | Positive | 1179220 - 1179579 | 13263.7 |
| hypothetical protein | EQ875_01046 | Not Available | Positive | 1180174 - 1180482 | 12140.0 |
| hypothetical protein | EQ875_01047 | Not Available | Positive | 1180827 - 1181045 | 8786.73 |
| putative cyclic di-gmp phosphodiesterase pdeg | EQ875_01048 | Not Available | Positive | 1181011 - 1182477 | 55661.0 |
| hypothetical protein | EQ875_01049 | Not Available | Positive | 1182613 - 1183263 | 22595.2 |
| hypothetical protein | EQ875_01050 | Not Available | Negative | 1183314 - 1183769 | 17943.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


