Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fes cluster assembly protein sufd | EQ875_01031 | Not Available | Positive | 1162899 - 1164170 | 47652.9 |
| cysteine desulfurase | EQ875_01032 | Not Available | Positive | 1164167 - 1165384 | 45510.8 |
| cysteine desulfuration protein sufe | EQ875_01033 | Not Available | Positive | 1165397 - 1165786 | 14817.9 |
| hypothetical protein | EQ875_01034 | Not Available | Positive | 1165941 - 1166201 | 9951.82 |
| putative cyclic di-gmp phosphodiesterase pdeg | EQ875_01035 | Not Available | Positive | 1166389 - 1167864 | 56515.5 |
| bifunctional nad(p)h-hydrate repair enzyme nnr | EQ875_01036 | Not Available | Positive | 1167994 - 1169463 | 51873.6 |
| major outer membrane prolipoprotein lpp | EQ875_01037 | Not Available | Negative | 1169520 - 1169774 | 8948.55 |
| hypothetical protein | EQ875_01038 | Not Available | Negative | 1170133 - 1170726 | 22774.3 |
| hypothetical protein | EQ875_01039 | Not Available | Negative | 1170835 - 1171716 | 31821.0 |
| hypothetical protein | EQ875_01040 | Not Available | Positive | 1172043 - 1172294 | 9575.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


