Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate hydratase class ii | EQ875_01011 | Not Available | Negative | 1134786 - 1136165 | 48827.8 |
| putative hydrolase yxep | EQ875_01012 | Not Available | Negative | 1136250 - 1137389 | 42331.2 |
| hypothetical protein | EQ875_01013 | Not Available | Positive | 1137542 - 1137802 | 9752.67 |
| glucose-1-phosphate adenylyltransferase | EQ875_01014 | Not Available | Positive | 1138318 - 1139535 | 45074.1 |
| glycogen synthase | EQ875_01015 | Not Available | Positive | 1139525 - 1141042 | 57014.5 |
| pullulanase | EQ875_01016 | Not Available | Positive | 1141295 - 1144606 | 122120.0 |
| periplasmic alpha-amylase | EQ875_01017 | Not Available | Positive | 1144677 - 1146743 | 78259.5 |
| hypothetical protein | EQ875_01018 | Not Available | Negative | 1146892 - 1147605 | 27657.7 |
| hypothetical protein | EQ875_01019 | Not Available | Negative | 1147700 - 1149199 | 57162.8 |
| hypothetical protein | EQ875_01020 | Not Available | Positive | 1149588 - 1151306 | 64462.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


