Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00005 | Not Available | Positive | 3002 - 3214 | 8389.56 |
| deoxyribonucleoside regulator | EQ875_00006 | Not Available | Positive | 3214 - 4188 | 35540.6 |
| Trna-sec(p) | Not Available | Not Available | Positive | 4296 - 4390 | Not Available |
| selenocysteine-specific elongation factor | EQ875_00008 | Not Available | Negative | 4454 - 6373 | 72312.6 |
| l-seryl-trna(sec) selenium transferase | EQ875_00009 | Not Available | Negative | 6370 - 7821 | 53206.2 |
| protein fdhe | EQ875_00010 | Not Available | Negative | 7898 - 8788 | 33476.4 |
| formate dehydrogenase, nitrate-inducible, cytochrome b556(fdn) subunit | EQ875_00011 | Not Available | Negative | 8951 - 9583 | 23891.6 |
| formate dehydrogenase-o iron-sulfur subunit | EQ875_00012 | Not Available | Negative | 9580 - 10470 | 32677.9 |
| formate dehydrogenase, nitrate-inducible, major subunit | EQ875_00013 | Not Available | Negative | 10474 - 12852 | 88641.7 |
| formate dehydrogenase, nitrate-inducible, major subunit | EQ875_00014 | Not Available | Negative | 12901 - 13488 | 21415.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


