Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00981 | Not Available | Negative | 1101922 - 1103286 | 53481.2 |
| conserved virulence factor b | EQ875_00982 | Not Available | Positive | 1103679 - 1104521 | 31235.8 |
| putative nucleoside permease nupx | EQ875_00983 | Not Available | Positive | 1104859 - 1106067 | 42028.2 |
| molybdopterin-synthase adenylyltransferase | EQ875_00984 | Not Available | Negative | 1106246 - 1107004 | 27567.6 |
| molybdopterin molybdenumtransferase | EQ875_00985 | Not Available | Negative | 1107017 - 1108252 | 44167.9 |
| gtp cyclohydrolase 1 | EQ875_00986 | Not Available | Positive | 1108547 - 1109200 | 24454.7 |
| nodulation protein d 2 | EQ875_00987 | Not Available | Positive | 1109307 - 1110227 | 35063.4 |
| putative glycyl-radical enzyme activating enzyme yjjw | EQ875_00988 | Not Available | Negative | 1110243 - 1111127 | 33379.4 |
| putative protein yjji | EQ875_00989 | Not Available | Negative | 1111150 - 1112694 | 57584.8 |
| hypothetical protein | EQ875_00990 | Not Available | Positive | 1112839 - 1113075 | 8257.99 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


