Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein oprm | EQ875_00971 | Not Available | Positive | 1090274 - 1091881 | 59240.4 |
| hypothetical protein | EQ875_00972 | Not Available | Positive | 1091881 - 1092090 | 7842.92 |
| p-hydroxybenzoic acid efflux pump subunit aaea | EQ875_00973 | Not Available | Positive | 1092098 - 1092994 | 33292.1 |
| hypothetical protein | EQ875_00974 | Not Available | Positive | 1093039 - 1093731 | 25647.8 |
| putative transport protein ydik | EQ875_00975 | Not Available | Positive | 1093724 - 1094851 | 40102.6 |
| hypothetical protein | EQ875_00976 | Not Available | Positive | 1094977 - 1096140 | 43359.8 |
| gtpase era | EQ875_00977 | Not Available | Positive | 1096133 - 1097677 | 57572.3 |
| sodium/glucose cotransporter | EQ875_00978 | Not Available | Negative | 1097780 - 1099411 | 58774.1 |
| o-acetyltransferase wech | EQ875_00979 | Not Available | Negative | 1099812 - 1100837 | 39041.0 |
| hth-type transcriptional regulator yidz | EQ875_00980 | Not Available | Negative | 1100964 - 1101890 | 36118.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


