Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate synthase | EQ875_00941 | Not Available | Positive | 1051407 - 1052279 | 33362.6 |
| catabolite repressor/activator | EQ875_00942 | Not Available | Negative | 1052368 - 1053348 | 36244.7 |
| multiphosphoryl transfer protein | EQ875_00943 | Not Available | Positive | 1053885 - 1055003 | 39604.5 |
| tagatose-6-phosphate kinase | EQ875_00944 | Not Available | Positive | 1055004 - 1055957 | 33695.2 |
| pts system fructose-specific eiib'bc component | EQ875_00945 | Not Available | Positive | 1055967 - 1057700 | 59498.2 |
| sensor histidine kinase rcsc | EQ875_00946 | Not Available | Positive | 1058045 - 1059961 | 72472.8 |
| peptide deformylase 2 | EQ875_00947 | Not Available | Positive | 1060144 - 1060659 | 19345.5 |
| hypothetical protein | EQ875_00948 | Not Available | Negative | 1060715 - 1061740 | 38899.3 |
| murein tetrapeptide carboxypeptidase | EQ875_00949 | Not Available | Negative | 1061882 - 1062826 | 35295.2 |
| anhydro-n-acetylmuramic acid kinase | EQ875_00950 | Not Available | Negative | 1062930 - 1064054 | 40790.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


