Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperone protein hsca | EQ875_00931 | Not Available | Negative | 1039563 - 1041398 | 66637.9 |
| hypothetical protein | EQ875_00932 | Not Available | Negative | 1041398 - 1042087 | 25394.9 |
| hypothetical protein | EQ875_00933 | Not Available | Positive | 1042502 - 1042858 | 13476.7 |
| hypothetical protein | EQ875_00934 | Not Available | Negative | 1042962 - 1044041 | 39742.3 |
| lipid a biosynthesis lauroyltransferase | EQ875_00935 | Not Available | Positive | 1044293 - 1045225 | 35938.5 |
| lipid a biosynthesis lauroyltransferase | EQ875_00936 | Not Available | Positive | 1045458 - 1046384 | 35722.3 |
| hypothetical protein | EQ875_00937 | Not Available | Positive | 1046517 - 1047353 | 31065.3 |
| serine transporter | EQ875_00938 | Not Available | Negative | 1047421 - 1048710 | 46319.1 |
| hypothetical protein | EQ875_00939 | Not Available | Negative | 1049310 - 1049792 | 18092.5 |
| phospho-2-dehydro-3-deoxyheptonate aldolase, trp-sensitive | EQ875_00940 | Not Available | Negative | 1050057 - 1051115 | 38393.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


