Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00921 | Not Available | Positive | 1027018 - 1027875 | 32503.8 |
| peptidase t | EQ875_00922 | Not Available | Positive | 1027932 - 1029173 | 45655.1 |
| amino-acid carrier protein alst | EQ875_00923 | Not Available | Negative | 1029269 - 1030759 | 53380.9 |
| hypothetical protein | EQ875_00924 | Not Available | Negative | 1031551 - 1031727 | 6658.76 |
| hypothetical protein | EQ875_00925 | Not Available | Negative | 1031983 - 1032993 | 37575.7 |
| hypothetical protein | EQ875_00926 | Not Available | Positive | 1033486 - 1033797 | 11670.1 |
| vitamin b12 import atp-binding protein btud | EQ875_00927 | Not Available | Positive | 1034195 - 1035055 | 32012.1 |
| hypothetical protein | EQ875_00928 | Not Available | Positive | 1035059 - 1035898 | 31228.3 |
| hypothetical protein | EQ875_00929 | Not Available | Negative | 1035958 - 1036161 | 7665.17 |
| chaperone protein hsca | EQ875_00930 | Not Available | Negative | 1036558 - 1039419 | 106346.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


