Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino-acid carrier protein alst | EQ875_00901 | Not Available | Negative | 1001537 - 1002943 | 49712.7 |
| chitinase a | EQ875_00902 | Not Available | Negative | 1003449 - 1004759 | 48902.0 |
| hth-type transcriptional activator rhar | EQ875_00903 | Not Available | Positive | 1005212 - 1005916 | 26691.1 |
| cobalt-zinc-cadmium resistance protein czca | EQ875_00904 | Not Available | Negative | 1005908 - 1009003 | 112986.0 |
| multidrug resistance protein mdta | EQ875_00905 | Not Available | Negative | 1008996 - 1010087 | 40491.8 |
| hypothetical protein | EQ875_00906 | Not Available | Positive | 1010252 - 1010881 | 23837.9 |
| hypothetical protein | EQ875_00907 | Not Available | Positive | 1011014 - 1011412 | 13690.4 |
| hypothetical protein | EQ875_00908 | Not Available | Positive | 1011613 - 1012074 | 17439.0 |
| hypothetical protein | EQ875_00909 | Not Available | Positive | 1012302 - 1016831 | 168616.0 |
| protein tsga | EQ875_00910 | Not Available | Negative | 1016915 - 1018102 | 43683.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


