Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 42_rectal |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1325138 bp
Thymine Count
1326980 bp
Guanine Count
1359154 bp
Cytosine Count
1352967 bp
Genome Length
5374076 bp
Protein-coding Genes
4877 genes
Non-Coding Genes
364 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqae/pmp3 family membrane protein | EPS91_11425 | Not Available | Positive | 2445426 - 2445584 | 5865.57 |
| peptidoglycan-binding protein lysm | EPS91_11430 | Not Available | Positive | 2445668 - 2446117 | 16094.0 |
| dna-binding transcriptional regulator csir | EPS91_11435 | Not Available | Negative | 2446118 - 2446780 | 25045.4 |
| gaba permease | EPS91_11440 | Not Available | Negative | 2446801 - 2448201 | 51083.1 |
| 4-aminobutyrate--2-oxoglutarate transaminase | EPS91_11445 | Not Available | Negative | 2448438 - 2449718 | 45606.3 |
| nadp-dependent succinate-semialdehyde dehydrogenase i | EPS91_11450 | Not Available | Negative | 2449732 - 2451180 | 51768.1 |
| l-2-hydroxyglutarate oxidase | EPS91_11455 | Not Available | Negative | 2451203 - 2452471 | 46127.7 |
| carbon starvation induced protein csid | EPS91_11460 | Not Available | Negative | 2452491 - 2453468 | 37397.6 |
| hypothetical protein | EPS91_11465 | Not Available | Negative | 2453805 - 2455706 | 71909.4 |
| oligopeptidase b | EPS91_11580 | Not Available | Negative | 2470372 - 2472432 | 79462.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





