Rheinheimera sp. YQF-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Rheinheimera

Description

Rheinheimera sp. YQF-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This species is cataloged under the accession number RZUF00000000.1, which provides a reference point for genomic studies and further research into its biological properties. The Gram-negative classification indicates that Rheinheimera sp. YQF-1 possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this group of bacteria. This structural feature often contributes to the organism's resilience to certain environmental stresses and influences its interactions with other microorganisms and hosts. Understanding the genomic characteristics of Rheinheimera sp. YQF-1 is essential for elucidating its ecological role. With a single replicon, the genetic organization may allow for efficient replication and adaptation to varying environments. This trait could confer advantages in nutrient acquisition and survival in diverse habitats, particularly in aquatic ecosystems where members of the Rheinheimera genus are commonly found. In summary, Rheinheimera sp. YQF-1 exhibits key traits of Gram-negative rods with a single replicon, which may play a significant role in its ecological interactions and adaptations. Further exploration of its genomic features and ecological functions could enhance our understanding of its role within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Rheinheimera sp. YQF-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rheinheimera sp. YQF-1 Scaffold100, whole genome shotgun sequence.

Gene Summary

Adenine Count

1201932 bp

Thymine Count

1211501 bp

Guanine Count

1042243 bp

Cytosine Count

1030125 bp

Genome Length

4493802 bp

Protein-coding Genes

3851 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3369 domain-containing proteinEMM73_19080Not AvailableNegative4321648 - 432320458600.6
txe/yoeb family addiction module toxinEMM73_19085Not AvailableNegative4323398 - 432366110347.2
type ii toxin-antitoxin system prevent-host-death family antitoxinEMM73_19090Not AvailableNegative4323654 - 43239089391.11
duf3303 domain-containing proteinEMM73_19100Not AvailableNegative4324460 - 43246969571.4
peptide chain release factor n(5)-glutamine methyltransferaseEMM73_19105Not AvailableNegative4324935 - 432582232260.7
peptide chain release factor 1EMM73_19110Not AvailableNegative4325809 - 432690040859.0
glutamyl-trna reductaseEMM73_19115Not AvailableNegative4326920 - 432816745628.7
outer membrane lipoprotein lolbEMM73_19120Not AvailablePositive4328261 - 432887822568.9
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseEMM73_19125Not AvailablePositive4328866 - 432971130672.9
ribose-phosphate pyrophosphokinaseEMM73_19130Not AvailablePositive4329783 - 433072734346.7

Displaying genes 3781 – 3790 of 3939 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.