Rheinheimera sp. YQF-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Rheinheimera

Description

Rheinheimera sp. YQF-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This species is cataloged under the accession number RZUF00000000.1, which provides a reference point for genomic studies and further research into its biological properties. The Gram-negative classification indicates that Rheinheimera sp. YQF-1 possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this group of bacteria. This structural feature often contributes to the organism's resilience to certain environmental stresses and influences its interactions with other microorganisms and hosts. Understanding the genomic characteristics of Rheinheimera sp. YQF-1 is essential for elucidating its ecological role. With a single replicon, the genetic organization may allow for efficient replication and adaptation to varying environments. This trait could confer advantages in nutrient acquisition and survival in diverse habitats, particularly in aquatic ecosystems where members of the Rheinheimera genus are commonly found. In summary, Rheinheimera sp. YQF-1 exhibits key traits of Gram-negative rods with a single replicon, which may play a significant role in its ecological interactions and adaptations. Further exploration of its genomic features and ecological functions could enhance our understanding of its role within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Rheinheimera sp. YQF-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rheinheimera sp. YQF-1 Scaffold100, whole genome shotgun sequence.

Gene Summary

Adenine Count

1201932 bp

Thymine Count

1211501 bp

Guanine Count

1042243 bp

Cytosine Count

1030125 bp

Genome Length

4493802 bp

Protein-coding Genes

3851 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2fe-2s ferredoxin-like proteinEMM73_15950Not AvailableNegative3632289 - 36325439337.42
ribonucleotide-diphosphate reductase subunit betaEMM73_15955Not AvailableNegative3632559 - 363368943423.6
ribonucleoside-diphosphate reductase subunit alphaEMM73_15960Not AvailableNegative3633753 - 363603886050.7
had family hydrolaseEMM73_15965Not AvailableNegative3636408 - 363708525010.0
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigEMM73_15970Not AvailableNegative3637082 - 363779225554.6
dna topoisomerase (atp-hydrolyzing) subunit aEMM73_15975Not AvailablePositive3637970 - 364059496832.4
3-phosphoserine/phosphohydroxythreonine transaminaseEMM73_15980Not AvailablePositive3640832 - 364191139676.5
3-phosphoshikimate 1-carboxyvinyltransferaseEMM73_15985Not AvailablePositive3641911 - 364319746146.3
(d)cmp kinaseEMM73_15990Not AvailablePositive3643313 - 364399324843.6
30s ribosomal protein s1EMM73_15995Not AvailablePositive3644095 - 364577161447.5

Displaying genes 3161 – 3170 of 3939 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.