Rheinheimera sp. YQF-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Rheinheimera

Description

Rheinheimera sp. YQF-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This species is cataloged under the accession number RZUF00000000.1, which provides a reference point for genomic studies and further research into its biological properties. The Gram-negative classification indicates that Rheinheimera sp. YQF-1 possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this group of bacteria. This structural feature often contributes to the organism's resilience to certain environmental stresses and influences its interactions with other microorganisms and hosts. Understanding the genomic characteristics of Rheinheimera sp. YQF-1 is essential for elucidating its ecological role. With a single replicon, the genetic organization may allow for efficient replication and adaptation to varying environments. This trait could confer advantages in nutrient acquisition and survival in diverse habitats, particularly in aquatic ecosystems where members of the Rheinheimera genus are commonly found. In summary, Rheinheimera sp. YQF-1 exhibits key traits of Gram-negative rods with a single replicon, which may play a significant role in its ecological interactions and adaptations. Further exploration of its genomic features and ecological functions could enhance our understanding of its role within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Rheinheimera sp. YQF-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rheinheimera sp. YQF-1 Scaffold100, whole genome shotgun sequence.

Gene Summary

Adenine Count

1201932 bp

Thymine Count

1211501 bp

Guanine Count

1042243 bp

Cytosine Count

1030125 bp

Genome Length

4493802 bp

Protein-coding Genes

3851 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospho-n-acetylmuramoyl-pentapeptide- transferaseEMM73_12385Not AvailableNegative2856236 - 285731840042.1
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseEMM73_12390Not AvailableNegative2857312 - 285868848648.6
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseEMM73_12395Not AvailableNegative2858685 - 286015453072.9
peptidoglycan glycosyltransferase ftsiEMM73_12400Not AvailableNegative2860144 - 286189563261.9
cell division protein ftslEMM73_12405Not AvailableNegative2861895 - 286220311955.8
16s rrna (cytosine(1402)-n(4))-methyltransferaseEMM73_12410Not AvailableNegative2862200 - 286313833910.8
transcriptional regulator mrazEMM73_12415Not AvailableNegative2863138 - 286360217747.3
flavin reductase family proteinEMM73_12420Not AvailableNegative2864173 - 286479922583.1
chromate efflux transporterEMM73_12425Not AvailableNegative2864799 - 286614248456.6
16s rrna (cytidine(1402)-2'-o)-methyltransferaseEMM73_12435Not AvailableNegative2866688 - 286753630569.1

Displaying genes 2461 – 2470 of 3939 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.