Rheinheimera sp. YQF-1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Chromatiaceae

Genus

Rheinheimera

Description

Rheinheimera sp. YQF-1 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This species is cataloged under the accession number RZUF00000000.1, which provides a reference point for genomic studies and further research into its biological properties. The Gram-negative classification indicates that Rheinheimera sp. YQF-1 possesses a thin peptidoglycan layer surrounded by an outer membrane, typical of this group of bacteria. This structural feature often contributes to the organism's resilience to certain environmental stresses and influences its interactions with other microorganisms and hosts. Understanding the genomic characteristics of Rheinheimera sp. YQF-1 is essential for elucidating its ecological role. With a single replicon, the genetic organization may allow for efficient replication and adaptation to varying environments. This trait could confer advantages in nutrient acquisition and survival in diverse habitats, particularly in aquatic ecosystems where members of the Rheinheimera genus are commonly found. In summary, Rheinheimera sp. YQF-1 exhibits key traits of Gram-negative rods with a single replicon, which may play a significant role in its ecological interactions and adaptations. Further exploration of its genomic features and ecological functions could enhance our understanding of its role within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyChromatiaceae
GenusRheinheimera
SpeciesRheinheimera sediminis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Rheinheimera sp. YQF-1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rheinheimera sp. YQF-1 Scaffold100, whole genome shotgun sequence.

Gene Summary

Adenine Count

1201932 bp

Thymine Count

1211501 bp

Guanine Count

1042243 bp

Cytosine Count

1030125 bp

Genome Length

4493802 bp

Protein-coding Genes

3851 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEMM73_08085Not AvailableNegative1864976 - 186535014364.3
putative pyridoxal-dependent aspartate 1-decarboxylaseEMM73_08090Not AvailablePositive1865695 - 186733561084.8
hypothetical proteinEMM73_08095Not AvailableNegative1867408 - 186886854386.6
pspc domain-containing proteinEMM73_08100Not AvailablePositive1869178 - 18693757096.98
gfa family proteinEMM73_08105Not AvailablePositive1869405 - 186981214889.6
glycosyl transferaseEMM73_08110Not AvailableNegative1869814 - 1878537321272.0
pantoate--beta-alanine ligaseEMM73_08115Not AvailableNegative1878673 - 187951531084.6
3-methyl-2-oxobutanoate hydroxymethyltransferaseEMM73_08120Not AvailableNegative1879528 - 188031927978.3
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseEMM73_08125Not AvailableNegative1880526 - 188101118000.8
polynucleotide adenylyltransferase pcnbEMM73_08130Not AvailableNegative1881004 - 188244654517.1

Displaying genes 1611 – 1620 of 3939 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.