Hymenobacter gummosus strain KCTC 52166

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter gummosus strain KCTC 52166 is a Gram-negative, rod-shaped bacterium. This strain is notable for having a single replicon, which is indicative of its genomic organization. The complete genomic data for this strain is accessible under the accession number RXOF00000000.1. As a member of the Hymenobacter genus, H. gummosus is likely to exhibit characteristics typical of soil bacteria, such as the ability to degrade complex organic materials. The Gram-negative nature of this bacterium suggests it possesses an outer membrane that may contribute to its adaptability in various environments, including nutrient-poor habitats. The presence of a single replicon may provide insights into its evolutionary strategies and metabolic capabilities. This trait could indicate a streamlined genomic architecture, potentially allowing for efficient replication and maintenance of essential functions under specific ecological conditions. As such, Hymenobacter gummosus strain KCTC 52166 may play a role in soil health and nutrient cycling, reflecting its ecological significance in maintaining microbial diversity and contributing to the degradation of organic compounds in its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter gummosus
Strainstrain KCTC 52166

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter gummosus strain KCTC 52166 contig_130, whole genome

Gene Summary

Adenine Count

1138878 bp

Thymine Count

1146899 bp

Guanine Count

2112804 bp

Cytosine Count

2122023 bp

Genome Length

6525284 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipid-a-disaccharide synthaseEJV47_21905Not AvailablePositive5207595 - 520870442473.6
hypothetical proteinEJV47_21910Not AvailablePositive5208728 - 520903311362.3
atp-dependent clp protease atp-binding subunit clpxEJV47_21915Not AvailableNegative5209263 - 521048945593.4
atp-dependent clp protease proteolytic subunitEJV47_21920Not AvailableNegative5210991 - 521169526115.4
trigger factorEJV47_21925Not AvailableNegative5211830 - 521315850342.1
Trna-leuNot AvailableNot AvailablePositive5213288 - 5213372Not Available
enoyl-coa hydratase/isomerase family proteinEJV47_21935Not AvailableNegative5213463 - 521423627438.7
phenylacetic acid degradation bifunctional protein paazEJV47_21940Not AvailableNegative5214358 - 521641274121.4
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomeraseEJV47_21945Not AvailableNegative5216577 - 521735927868.5
hypothetical proteinEJV47_21950Not AvailableNegative5217558 - 521803117869.3

Displaying genes 4311 – 4320 of 5466 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.