Hymenobacter gummosus strain KCTC 52166

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter gummosus strain KCTC 52166 is a Gram-negative, rod-shaped bacterium. This strain is notable for having a single replicon, which is indicative of its genomic organization. The complete genomic data for this strain is accessible under the accession number RXOF00000000.1. As a member of the Hymenobacter genus, H. gummosus is likely to exhibit characteristics typical of soil bacteria, such as the ability to degrade complex organic materials. The Gram-negative nature of this bacterium suggests it possesses an outer membrane that may contribute to its adaptability in various environments, including nutrient-poor habitats. The presence of a single replicon may provide insights into its evolutionary strategies and metabolic capabilities. This trait could indicate a streamlined genomic architecture, potentially allowing for efficient replication and maintenance of essential functions under specific ecological conditions. As such, Hymenobacter gummosus strain KCTC 52166 may play a role in soil health and nutrient cycling, reflecting its ecological significance in maintaining microbial diversity and contributing to the degradation of organic compounds in its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter gummosus
Strainstrain KCTC 52166

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter gummosus strain KCTC 52166


Gene Summary

Adenine Count

1138878 bp

Thymine Count

1146899 bp

Guanine Count

2112804 bp

Cytosine Count

2122023 bp

Genome Length

6525284 bp

Protein-coding Genes

5415 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
upf0175 family proteinEJV47_11250Not AvailableNegative2636324 - 26365668923.7
duf3368 domain-containing proteinEJV47_11255Not AvailableNegative2636669 - 263712716798.7
upf0175 family proteinEJV47_11260Not AvailableNegative2637120 - 26373478159.83
duf559 domain-containing proteinEJV47_11265Not AvailableNegative2637466 - 263783714491.3
acyl-coa carboxylase subunit betaEJV47_11270Not AvailableNegative2638000 - 263965559862.4
mce family proteinEJV47_11275Not AvailableNegative2640060 - 264126542950.8
n-acetylmuramoyl-l-alanine amidaseEJV47_11280Not AvailableNegative2641174 - 264196828596.8
lps-assembly protein lptdEJV47_11285Not AvailablePositive2642129 - 2644921103195.0
3-methyl-2-oxobutanoate hydroxymethyltransferaseEJV47_11290Not AvailablePositive2645124 - 264593929556.0
rlua family pseudouridine synthaseEJV47_11295Not AvailablePositive2646346 - 264706226923.8

Displaying genes 2211 – 2220 of 5466 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.