Shewanella atlantica strain HAW-EB5

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella atlantica strain HAW-EB5 is a Gram-negative, aerobic bacterium characterized by its rod shape and the presence of flagella. This strain is psychrophilic, thriving at an optimal temperature of 5°C, which positions it well within the cold-adapted environments commonly found in polar regions and deep-sea ecosystems. The genome of S. atlantica strain HAW-EB5 contains a single replicon, indicating a streamlined genetic organization typical of many members of the Shewanella genus. Furthermore, this strain is non-spore-forming, which suggests that it relies on other survival strategies to endure environmental stressors rather than entering a dormant spore state. The adaptability of Shewanella species to cold environments and their metabolic versatility allow them to play crucial roles in biogeochemical cycling, particularly in the reduction of metals and organic compounds in marine sediments. The ability to thrive at low temperatures while remaining metabolically active can significantly impact nutrient cycling in cold marine ecosystems, influencing microbial community dynamics and ecosystem health. Overall, the traits of Shewanella atlantica strain HAW-EB5 underscore its ecological significance, particularly in nutrient cycling processes in psychrophilic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella atlantica
Strainstrain HAW-EB5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shewanella atlantica strain HAW-EB5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature5
Temperature rangepsychrophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella atlantica strain HAW-EB5

Gene Summary

Adenine Count

1494847 bp

Thymine Count

1426199 bp

Guanine Count

1189223 bp

Cytosine Count

1282213 bp

Genome Length

5394979 bp

Protein-coding Genes

4417 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane protein assembly factor bambEKG39_01870Not AvailableNegative461746 - 46293342743.2
tetratricopeptide repeat proteinEKG39_01875Not AvailableNegative462945 - 46356521799.6
histidine--trna ligaseEKG39_01880Not AvailableNegative463579 - 46485347812.3
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseEKG39_01885Not AvailableNegative465074 - 46618940516.9
duf4115 domain-containing proteinEKG39_01890Not AvailableNegative466293 - 46721333411.5
type iv pilus biogenesis/stability protein pilwEKG39_01895Not AvailableNegative467213 - 46800129320.0
bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmnEKG39_01900Not AvailableNegative468035 - 46915641525.1
hlyc/corc family transporterEKG39_01905Not AvailablePositive469313 - 47039539682.6
bifunctional metallophosphatase/5'-nucleotidaseEKG39_01910Not AvailablePositive470682 - 47242764646.7
gnat family n-acetyltransferaseEKG39_01915Not AvailableNegative472658 - 47319120753.7

Displaying genes 381 – 390 of 4542 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.