Shewanella atlantica strain HAW-EB5

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella atlantica strain HAW-EB5 is a Gram-negative, aerobic bacterium characterized by its rod shape and the presence of flagella. This strain is psychrophilic, thriving at an optimal temperature of 5°C, which positions it well within the cold-adapted environments commonly found in polar regions and deep-sea ecosystems. The genome of S. atlantica strain HAW-EB5 contains a single replicon, indicating a streamlined genetic organization typical of many members of the Shewanella genus. Furthermore, this strain is non-spore-forming, which suggests that it relies on other survival strategies to endure environmental stressors rather than entering a dormant spore state. The adaptability of Shewanella species to cold environments and their metabolic versatility allow them to play crucial roles in biogeochemical cycling, particularly in the reduction of metals and organic compounds in marine sediments. The ability to thrive at low temperatures while remaining metabolically active can significantly impact nutrient cycling in cold marine ecosystems, influencing microbial community dynamics and ecosystem health. Overall, the traits of Shewanella atlantica strain HAW-EB5 underscore its ecological significance, particularly in nutrient cycling processes in psychrophilic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella atlantica
Strainstrain HAW-EB5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Shewanella atlantica strain HAW-EB5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature5
Temperature rangepsychrophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella atlantica strain HAW-EB5

Gene Summary

Adenine Count

1494847 bp

Thymine Count

1426199 bp

Guanine Count

1189223 bp

Cytosine Count

1282213 bp

Genome Length

5394979 bp

Protein-coding Genes

4417 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane protein insertion efficiency factor yiddEKG39_20325Not AvailableNegative4802661 - 48029189581.85
ribonuclease p protein componentEKG39_20330Not AvailableNegative4802885 - 480324113894.2
50s ribosomal protein l34EKG39_20335Not AvailableNegative4803256 - 48033935140.46
chromosomal replication initiator protein dnaaEKG39_20340Not AvailablePositive4803838 - 480522652378.6
dna polymerase iii subunit betaEKG39_20345Not AvailablePositive4805246 - 480634641018.5
dna replication/repair protein recfEKG39_20350Not AvailablePositive4806630 - 480771240765.2
dna topoisomerase (atp-hydrolyzing) subunit bEKG39_20355Not AvailablePositive4807729 - 481014689768.4
hypothetical proteinEKG39_20360Not AvailablePositive4810310 - 481098726061.3
5-oxoprolinase subunit pxpaEKG39_20365Not AvailableNegative4811006 - 481174926958.7
biotin-dependent carboxyltransferase family proteinEKG39_20370Not AvailableNegative4811868 - 481281834253.8

Displaying genes 3981 – 3990 of 4542 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.