Variovorax guangxiensis strain DSM 27352 42

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax guangxiensis strain DSM 27352 is a rod-shaped bacterium characterized by its single replicon. The strain is cataloged under the accession RXFT00000000.1, which contributes to its identification and classification within microbial databases. As a member of the Variovorax genus, this strain is likely involved in various ecological processes, particularly in the degradation of complex organic compounds. Members of the Variovorax genus are often noted for their versatility in utilizing diverse carbon sources, which can play a significant role in bioremediation and nutrient cycling in different environments. The presence of a single replicon suggests a streamlined genomic organization, which may enhance its adaptability and efficiency in various ecological niches. This trait can be indicative of the organism's evolutionary strategies in adapting to its environment, although specific ecological interactions and pathways for this strain are not provided. In summary, Variovorax guangxiensis strain DSM 27352 exhibits key traits such as its rod shape and single replicon structure, contributing to its functional role in environmental processes. Understanding the characteristics of this strain can provide insights into its potential applications in bioremediation and environmental sustainability efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax guangxiensis
Strainstrain DSM 27352 42

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax guangxiensis strain DSM 27352 42, whole genome shotgun

Gene Summary

Adenine Count

1167077 bp

Thymine Count

1172628 bp

Guanine Count

2433630 bp

Cytosine Count

2411990 bp

Genome Length

7188392 bp

Protein-coding Genes

6475 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homoprotocatechuate degradation operon regulator hparEJP67_14630Not AvailablePositive3183361 - 318379816327.8
fumarylacetoacetate hydrolaseEJP67_14635Not AvailablePositive3183795 - 318443322455.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomeraseEJP67_14640Not AvailablePositive3184430 - 318520028390.8
tripartite tricarboxylate transporter substrate binding proteinEJP67_14645Not AvailablePositive3185270 - 318625034178.4
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseEJP67_14650Not AvailablePositive3186281 - 318774752387.6
tripartite tricarboxylate transporter substrate binding proteinEJP67_14655Not AvailablePositive3187786 - 318875433736.8
aromatic ring-opening dioxygenase subunit ligaEJP67_14660Not AvailablePositive3188758 - 318909312325.8
extradiol ring-cleavage dioxygenaseEJP67_14665Not AvailablePositive3189090 - 318991730337.3
5-carboxymethyl-2-hydroxymuconate delta-isomeraseEJP67_14670Not AvailablePositive3189934 - 319034114876.9
2-oxo-hepta-3-ene-1,7-dioic acid hydrataseEJP67_14675Not AvailablePositive3190366 - 319116929301.0

Displaying genes 2991 – 3000 of 6603 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.