Sphingorhabdus wooponensis strain 03SU3-P J_8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus wooponensis strain 03SU3-P J_8 is characterized by a single replicon, indicating a straightforward genomic structure. This strain is catalogued under the accession number RWJI00000000.1, providing a reference point for researchers interested in exploring its genetic information and biological functions. The genus Sphingorhabdus is known for its association with various ecological niches, often contributing to the breakdown of complex organic materials. While specific metabolic pathways for S. wooponensis strain 03SU3-P J_8 are not detailed, the presence of a single replicon suggests potential efficiency in genetic regulation and replication processes, which can be advantageous for survival in fluctuating environments. The ecological role of Sphingorhabdus species, including 03SU3-P J_8, may involve interactions with other microorganisms and the environment, contributing to nutrient cycling and organic matter decomposition. Understanding the genetic and phenotypic traits of this strain could provide insights into its potential applications in biotechnology, particularly in bioremediation or waste processing, where its metabolic capabilities might be harnessed. In summary, Sphingorhabdus wooponensis strain 03SU3-P J_8, with its single replicon and specific genetic accession, holds promise for further research into its ecological contributions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus wooponensis
Strainstrain 03SU3-P J_8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus wooponensis strain 03SU3-P J_8, whole genome

Gene Summary

Adenine Count

495683 bp

Thymine Count

494372 bp

Guanine Count

592940 bp

Cytosine Count

594960 bp

Genome Length

2178496 bp

Protein-coding Genes

2022 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ll-diaminopimelate aminotransferaseD7D48_02355Not AvailablePositive448268 - 44947943980.7
acyl-coa thioesteraseD7D48_02360Not AvailablePositive449481 - 44994517373.5
class i sam-dependent methyltransferaseD7D48_02365Not AvailablePositive450001 - 45069025322.1
50s ribosomal protein l7/l12D7D48_02370Not AvailableNegative450817 - 45118812432.9
50s ribosomal protein l10D7D48_02375Not AvailableNegative451263 - 45177817673.4
isopropylmalate/homocitrate/citramalate synthaseD7D48_02380Not AvailablePositive452219 - 45263215183.0
gnat family n-acetyltransferaseD7D48_02385Not AvailablePositive452629 - 45321921894.9
amidohydrolaseD7D48_02390Not AvailablePositive453216 - 45412132394.3
duf3237 domain-containing proteinD7D48_02395Not AvailableNegative454146 - 45491927649.1
aromatic ring-hydroxylating dioxygenase subunit alphaD7D48_02400Not AvailablePositive454582 - 45603354899.4

Displaying genes 471 – 480 of 2082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.