Sphingorhabdus wooponensis strain 03SU3-P J_8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus wooponensis strain 03SU3-P J_8 is characterized by a single replicon, indicating a straightforward genomic structure. This strain is catalogued under the accession number RWJI00000000.1, providing a reference point for researchers interested in exploring its genetic information and biological functions. The genus Sphingorhabdus is known for its association with various ecological niches, often contributing to the breakdown of complex organic materials. While specific metabolic pathways for S. wooponensis strain 03SU3-P J_8 are not detailed, the presence of a single replicon suggests potential efficiency in genetic regulation and replication processes, which can be advantageous for survival in fluctuating environments. The ecological role of Sphingorhabdus species, including 03SU3-P J_8, may involve interactions with other microorganisms and the environment, contributing to nutrient cycling and organic matter decomposition. Understanding the genetic and phenotypic traits of this strain could provide insights into its potential applications in biotechnology, particularly in bioremediation or waste processing, where its metabolic capabilities might be harnessed. In summary, Sphingorhabdus wooponensis strain 03SU3-P J_8, with its single replicon and specific genetic accession, holds promise for further research into its ecological contributions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus wooponensis
Strainstrain 03SU3-P J_8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus wooponensis strain 03SU3-P J_8, whole genome

Gene Summary

Adenine Count

495683 bp

Thymine Count

494372 bp

Guanine Count

592940 bp

Cytosine Count

594960 bp

Genome Length

2178496 bp

Protein-coding Genes

2022 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acetate--coa ligaseD7D48_05920Not AvailableNegative1193145 - 119508271259.7
Trna-tyrNot AvailableNot AvailablePositive1195327 - 1195412Not Available
23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmbD7D48_05930Not AvailablePositive1195558 - 119631927224.4
dna-3-methyladenine glycosylase 2 family proteinD7D48_05935Not AvailablePositive1196329 - 119695222308.9
sdr family oxidoreductaseD7D48_05940Not AvailablePositive1197030 - 119785129258.9
4a-hydroxytetrahydrobiopterin dehydrataseD7D48_05945Not AvailableNegative1197838 - 119813110955.9
heme abc exporter atp-binding protein ccmaD7D48_05950Not AvailablePositive1198181 - 119879221323.8
heme abc transporter permease ccmbD7D48_05955Not AvailablePositive1198789 - 119943621755.5
sdr family nad(p)-dependent oxidoreductaseD7D48_05960Not AvailableNegative1199448 - 120027228549.2
nifu family proteinD7D48_05965Not AvailablePositive1200370 - 120094520211.1

Displaying genes 1181 – 1190 of 2082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.