Sphingorhabdus wooponensis strain 03SU3-P J_8

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingorhabdaceae

Genus

Sphingorhabdus

Description

Sphingorhabdus wooponensis strain 03SU3-P J_8 is characterized by a single replicon, indicating a straightforward genomic structure. This strain is catalogued under the accession number RWJI00000000.1, providing a reference point for researchers interested in exploring its genetic information and biological functions. The genus Sphingorhabdus is known for its association with various ecological niches, often contributing to the breakdown of complex organic materials. While specific metabolic pathways for S. wooponensis strain 03SU3-P J_8 are not detailed, the presence of a single replicon suggests potential efficiency in genetic regulation and replication processes, which can be advantageous for survival in fluctuating environments. The ecological role of Sphingorhabdus species, including 03SU3-P J_8, may involve interactions with other microorganisms and the environment, contributing to nutrient cycling and organic matter decomposition. Understanding the genetic and phenotypic traits of this strain could provide insights into its potential applications in biotechnology, particularly in bioremediation or waste processing, where its metabolic capabilities might be harnessed. In summary, Sphingorhabdus wooponensis strain 03SU3-P J_8, with its single replicon and specific genetic accession, holds promise for further research into its ecological contributions and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingorhabdaceae
GenusSphingorhabdus
SpeciesSphingorhabdus wooponensis
Strainstrain 03SU3-P J_8

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingorhabdus wooponensis strain 03SU3-P J_8, whole genome

Gene Summary

Adenine Count

495683 bp

Thymine Count

494372 bp

Guanine Count

592940 bp

Cytosine Count

594960 bp

Genome Length

2178496 bp

Protein-coding Genes

2022 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitroreductaseD7D48_05420Not AvailablePositive1087865 - 108843420779.2
gntr family transcriptional regulatorD7D48_05425Not AvailablePositive1088492 - 108883312423.2
helix-turn-helix domain-containing proteinD7D48_05430Not AvailableNegative1088853 - 109026851605.1
isocitrate lyaseD7D48_05435Not AvailablePositive1090417 - 109201859219.9
3-hydroxybutyrate dehydrogenaseD7D48_05440Not AvailableNegative1092290 - 109307527497.0
alpha-hydroxy-acid oxidizing proteinD7D48_05445Not AvailablePositive1093238 - 109438641849.4
lyse family translocatorD7D48_05450Not AvailableNegative1094383 - 109499421332.4
llm class flavin-dependent oxidoreductaseD7D48_05455Not AvailablePositive1095075 - 109608235020.4
succinate dehydrogenase flavoprotein subunitD7D48_05460Not AvailableNegative1096057 - 109785965243.3
succinate dehydrogenase, hydrophobic membrane anchor proteinD7D48_05465Not AvailableNegative1097859 - 109824814039.5

Displaying genes 1081 – 1090 of 2082 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.