Hymenobacter rigui strain KCTC 12533

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rigui strain KCTC 12533 is a Gram-negative, rod-shaped bacterium with a single replicon. This strain is part of the genus Hymenobacter, which is known for its ecological versatility, often being isolated from various environments. The complete genomic information for this strain is accessible under the accession number RWIT00000000.1. The Gram-negative classification of Hymenobacter rigui indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structure may confer specific advantages in terms of nutrient uptake and environmental adaptation. As a rod-shaped organism, Hymenobacter rigui is likely to exhibit specific motility patterns that could facilitate its survival in diverse habitats. The presence of only one replicon suggests a streamlined genomic organization that may enhance its efficiency in replication and metabolic processes. The ecological significance of Hymenobacter rigui lies in its potential role in various biogeochemical cycles, particularly in soil and aquatic environments. Its adaptability to different ecological niches may contribute to nutrient cycling and the maintenance of microbial diversity in these habitats. The understanding of its traits and genomic information can be pivotal for further research into its functional roles and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rigui
Strainstrain KCTC 12533

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rigui strain KCTC 12533

Gene Summary

Adenine Count

1062182 bp

Thymine Count

1062955 bp

Guanine Count

1582806 bp

Cytosine Count

1577090 bp

Genome Length

5287073 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ycei family proteinEI291_03140Not AvailableNegative750041 - 75060720550.7
hypothetical proteinEI291_03145Not AvailableNegative750632 - 75102714329.3
hypothetical proteinEI291_03150Not AvailableNegative751084 - 75196831471.8
port family proteinEI291_03155Not AvailableNegative752123 - 75363153118.1
rna polymerase sigma factorEI291_03160Not AvailableNegative753606 - 75420822887.3
protein translocase subunit secdfEI291_03165Not AvailableNegative754392 - 757367107826.0
hypothetical proteinEI291_03170Not AvailableNegative757516 - 75788413181.4
uridine-cytidine kinaseEI291_03175Not AvailableNegative758025 - 75866024121.7
rdgb/ham1 family non-canonical purine ntp pyrophosphataseEI291_03180Not AvailableNegative758810 - 75940021070.7
hypothetical proteinEI291_03185Not AvailableNegative759500 - 75989815071.9

Displaying genes 641 – 650 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.