Hymenobacter rigui strain KCTC 12533

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rigui strain KCTC 12533 is a Gram-negative, rod-shaped bacterium with a single replicon. This strain is part of the genus Hymenobacter, which is known for its ecological versatility, often being isolated from various environments. The complete genomic information for this strain is accessible under the accession number RWIT00000000.1. The Gram-negative classification of Hymenobacter rigui indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structure may confer specific advantages in terms of nutrient uptake and environmental adaptation. As a rod-shaped organism, Hymenobacter rigui is likely to exhibit specific motility patterns that could facilitate its survival in diverse habitats. The presence of only one replicon suggests a streamlined genomic organization that may enhance its efficiency in replication and metabolic processes. The ecological significance of Hymenobacter rigui lies in its potential role in various biogeochemical cycles, particularly in soil and aquatic environments. Its adaptability to different ecological niches may contribute to nutrient cycling and the maintenance of microbial diversity in these habitats. The understanding of its traits and genomic information can be pivotal for further research into its functional roles and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rigui
Strainstrain KCTC 12533

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rigui strain KCTC 12533

Gene Summary

Adenine Count

1062182 bp

Thymine Count

1062955 bp

Guanine Count

1582806 bp

Cytosine Count

1577090 bp

Genome Length

5287073 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pirin family proteinEI291_15810Not AvailableNegative3706619 - 370733226276.7
t9ss c-terminal target domain-containing proteinEI291_15815Not AvailableNegative3707505 - 370884248549.5
trna glutamyl-q synthetaseEI291_15820Not AvailablePositive3709015 - 370991432601.1
ragb/susd family nutrient uptake outer membrane proteinEI291_15825Not AvailableNegative3709978 - 371147453669.6
tonb-dependent receptorEI291_15830Not AvailableNegative3711496 - 3714675113505.0
deoxyribonuclease vEI291_15835Not AvailableNegative3715114 - 371579725322.0
duf1990 family proteinEI291_15840Not AvailablePositive3715905 - 371647421413.1
duf1990 domain-containing proteinEI291_15845Not AvailablePositive3716467 - 371719227744.8
cytochrome b/b6 domain-containing proteinEI291_15850Not AvailableNegative3717261 - 371792324325.1
nad(p)-dependent alcohol dehydrogenaseEI291_15855Not AvailablePositive3718094 - 371913437581.4

Displaying genes 3141 – 3150 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.