Hymenobacter rigui strain KCTC 12533

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rigui strain KCTC 12533 is a Gram-negative, rod-shaped bacterium with a single replicon. This strain is part of the genus Hymenobacter, which is known for its ecological versatility, often being isolated from various environments. The complete genomic information for this strain is accessible under the accession number RWIT00000000.1. The Gram-negative classification of Hymenobacter rigui indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of this group of bacteria. This structure may confer specific advantages in terms of nutrient uptake and environmental adaptation. As a rod-shaped organism, Hymenobacter rigui is likely to exhibit specific motility patterns that could facilitate its survival in diverse habitats. The presence of only one replicon suggests a streamlined genomic organization that may enhance its efficiency in replication and metabolic processes. The ecological significance of Hymenobacter rigui lies in its potential role in various biogeochemical cycles, particularly in soil and aquatic environments. Its adaptability to different ecological niches may contribute to nutrient cycling and the maintenance of microbial diversity in these habitats. The understanding of its traits and genomic information can be pivotal for further research into its functional roles and applications in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rigui
Strainstrain KCTC 12533

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rigui strain KCTC 12533

Gene Summary

Adenine Count

1062182 bp

Thymine Count

1062955 bp

Guanine Count

1582806 bp

Cytosine Count

1577090 bp

Genome Length

5287073 bp

Protein-coding Genes

4413 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
t9ss c-terminal target domain-containing proteinEI291_11120Not AvailablePositive2579601 - 2586164217870.0
hypothetical proteinEI291_11125Not AvailableNegative2586334 - 258737741154.3
hypothetical proteinEI291_11130Not AvailablePositive2587527 - 258877746545.5
peptidylprolyl isomeraseEI291_11135Not AvailablePositive2588882 - 258961927102.3
hypothetical proteinEI291_11140Not AvailableNegative2589646 - 259000513159.9
m13 family peptidaseEI291_11145Not AvailableNegative2590117 - 259221376899.1
exodeoxyribonuclease vii large subunitEI291_11150Not AvailablePositive2592448 - 259393255384.5
exodeoxyribonuclease vii small subunitEI291_11155Not AvailablePositive2593948 - 25941758700.04
hypothetical proteinEI291_11160Not AvailablePositive2594255 - 259460212101.0
hypothetical proteinEI291_11165Not AvailablePositive2594778 - 259530220002.9

Displaying genes 2211 – 2220 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.