Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203 is a Gram-negative, rod-shaped bacterium characterized by its mobility and presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, categorizing it as mesophilic. This strain is host-associated, displaying a biotic relationship characterized as free-living. It is known to inhabit a variety of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and numerous other species across multiple taxa such as mammals, birds, and even some plants like Solanum lycopersicum and Brassica oleracea var. italica. This extensive range of hosts indicates the ecological versatility of strain 628109. E. coli strain 628109 is associated with a wide spectrum of health effects, particularly in humans, where it is linked to urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and severe conditions such as hemolytic uremic syndrome (HUS). Its pathogenicity is notably significant, contributing to various clinical manifestations, including peritonitis, septicemia, and foodborne infections. The strain’s ability to cause a variety of diseases highlights its potential impact on public health and underscores the importance of monitoring and understanding its behavior in different ecological contexts. This multi-host capability not only facilitates its persistence in diverse environments but also raises concerns regarding zoonotic transmission and the emergence of antibiotic resistance, emphasizing the need for continued research and surveillance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 628109 SAMN10334465-rid9467093.guided.203

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203,

Gene Summary

Adenine Count

1348096 bp

Thymine Count

1334145 bp

Guanine Count

1348628 bp

Cytosine Count

1382533 bp

Genome Length

5442379 bp

Protein-coding Genes

4885 genes

Non-Coding Genes

342 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
30s ribosomal protein s19EC382_RS20765Not AvailablePositive4371675 - 437195310430.9
50s ribosomal protein l22EC382_RS20770Not AvailablePositive4371968 - 437230012227.0
30s ribosomal protein s3EC382_RS20775Not AvailablePositive4372318 - 437301925984.8
50s ribosomal protein l16EC382_RS20780Not AvailablePositive4373032 - 437344215282.1
50s ribosomal protein l29EC382_RS20785Not AvailablePositive4373442 - 43736337273.91
30s ribosomal protein s17EC382_RS20790Not AvailablePositive4373633 - 43738879705.01
50s ribosomal protein l14EC382_RS20795Not AvailablePositive4374052 - 437442313541.9
50s ribosomal protein l24EC382_RS20800Not AvailablePositive4374434 - 437474811316.9
50s ribosomal protein l5EC382_RS20805Not AvailablePositive4374763 - 437530220302.7
30s ribosomal protein s14EC382_RS20810Not AvailablePositive4375317 - 437562211581.1

Displaying genes 4151 – 4160 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total