Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 628109 (SAMN10334465-rid9467093.guided.203) is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli strain 628109 possesses the metabolic versatility to grow in both the presence and absence of oxygen, enabling it to adapt to varying conditions within its host environment. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of many Enterobacteriaceae family members. The ability to form pairs and singles may facilitate specific interactions within microbial communities or during colonization of host tissues. Furthermore, the facultative anaerobic capability allows E. coli strain 628109 to occupy niches that may fluctuate in oxygen availability, potentially influencing its role in the microbiome dynamics and overall host health. This strain's association with host environments suggests a potential for interactions with host immune responses and microbiome composition, which may provide insights into its ecological roles in maintaining host homeostasis or modulating gut health. Understanding the traits of E. coli strain 628109 may contribute to broader research on the functional diversity and adaptability of gut-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Accession NumberRVJZ00000000.2

Gene Summary

Adenine Count

1348096 bp

Thymine Count

1334145 bp

Guanine Count

1348628 bp

Cytosine Count

1382533 bp

Genome Length

5442379 bp

Protein-coding Genes

4885 genes

Non-Coding Genes

342 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Late gene regulator qEC382_RS04235Not Available+905126 - 90594730614.8
AttrNot AvailableNot Available+905211 - 905223Not Available
Abc transporterEC382_RS05605Not Available-1200704 - 120220655306.6
galactofuranose abc transporter substrate-binding protein ytfqEC382_RS05610Not Available-1202346 - 120330234332.5
inorganic diphosphataseEC382_RS05615Not Available+1203612 - 120414219704.6
Mazf-like proteinEC382_RS05620Not Available-1204222 - 120457212542.3
type ii toxin-antitoxin system chps family antitoxinEC382_RS05625Not Available-1204566 - 12048179272.12
AttlNot AvailableNot Available+1205000 - 1205016Not Available
IntegraseEC382_RS05630Not Available-1205107 - 120610238004.3
Xre family transcriptional regulatorEC382_RS05635Not Available-1206169 - 120646811165.4

Displaying genes 31 – 40 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites