Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 628109 SAMN10334465-rid9467093.guided.203 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1348096 bp
Thymine Count
1334145 bp
Guanine Count
1348628 bp
Cytosine Count
1382533 bp
Genome Length
5442379 bp
Protein-coding Genes
4885 genes
Non-Coding Genes
342 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superoxide dismutase | EC382_RS19020 | Not Available | Negative | 4009569 - 4010189 | 23080.2 |
| l-rhamnose/proton symporter rhat | EC382_RS19025 | Not Available | Positive | 4010474 - 4011508 | 37259.1 |
| hth-type transcriptional activator rhar | EC382_RS19030 | Not Available | Negative | 4011505 - 4012443 | 35642.4 |
| hth-type transcriptional activator rhas | EC382_RS19035 | Not Available | Negative | 4012427 - 4013263 | 32298.1 |
| rhamnulokinase | EC382_RS19040 | Not Available | Positive | 4013551 - 4015020 | 54174.2 |
| l-rhamnose isomerase | EC382_RS19045 | Not Available | Positive | 4015017 - 4016276 | 47211.0 |
| hcp family type vi secretion system effector | EC382_RS19050 | Not Available | Negative | 4016648 - 4017166 | 19256.8 |
| type vi secretion system contractile sheath small subunit | EC382_RS19055 | Not Available | Positive | 4017862 - 4018362 | 18052.4 |
| hypothetical protein | EC382_RS19060 | Not Available | Positive | 4018397 - 4018621 | 8411.01 |
| type vi secretion system contractile sheath large subunit | EC382_RS19065 | Not Available | Positive | 4018672 - 4020147 | 55705.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





