Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 628109 SAMN10334465-rid9467093.guided.203 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1348096 bp
Thymine Count
1334145 bp
Guanine Count
1348628 bp
Cytosine Count
1382533 bp
Genome Length
5442379 bp
Protein-coding Genes
4885 genes
Non-Coding Genes
342 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yqcc family protein | EC382_RS15405 | Not Available | Positive | 3229297 - 3229626 | 12742.2 |
| trna pseudouridine(65) synthase truc | EC382_RS15410 | Not Available | Positive | 3229626 - 3230408 | 29667.5 |
| flavodoxin | EC382_RS15415 | Not Available | Positive | 3230426 - 3230875 | 16275.1 |
| mfs transporter | EC382_RS15420 | Not Available | Positive | 3231310 - 3232662 | 49214.1 |
| glucarate dehydratase | EC382_RS15425 | Not Available | Positive | 3232664 - 3234004 | 48924.4 |
| glucarate dehydratase | EC382_RS15430 | Not Available | Positive | 3234025 - 3235365 | 49143.9 |
| two-component sensor histidine kinase bara | EC382_RS15435 | Not Available | Negative | 3235598 - 3238354 | 102460.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | EC382_RS15440 | Not Available | Positive | 3238411 - 3239712 | 48113.1 |
| gtp pyrophosphokinase | EC382_RS15445 | Not Available | Positive | 3239760 - 3241994 | 83880.4 |
| type ii toxin-antitoxin system antitoxin maze | EC382_RS15450 | Not Available | Positive | 3242072 - 3242320 | 9298.21 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





