Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 628109 SAMN10334465-rid9467093.guided.203 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1348096 bp
Thymine Count
1334145 bp
Guanine Count
1348628 bp
Cytosine Count
1382533 bp
Genome Length
5442379 bp
Protein-coding Genes
4885 genes
Non-Coding Genes
342 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | EC382_RS15305 | Not Available | Positive | 3207568 - 3208374 | 28563.6 |
| cysteine desulfurase sulfur acceptor subunit csde | EC382_RS15310 | Not Available | Negative | 3208425 - 3208868 | 15962.3 |
| cysteine desulfurase csda | EC382_RS15315 | Not Available | Negative | 3208868 - 3210073 | 43264.6 |
| ygdi/ygdr family lipoprotein | EC382_RS15320 | Not Available | Positive | 3210265 - 3210492 | 8174.67 |
| transcriptional regulator gcva | EC382_RS15325 | Not Available | Positive | 3210843 - 3211760 | 34403.4 |
| duf423 domain-containing protein | EC382_RS15330 | Not Available | Positive | 3211779 - 3212174 | 14334.0 |
| 23s rrna (cytidine(2498)-2'-o)-methyltransferase rlmm | EC382_RS15335 | Not Available | Positive | 3212167 - 3213267 | 41893.4 |
| l-fucose operon activator | EC382_RS15340 | Not Available | Negative | 3213311 - 3214042 | 27363.7 |
| l-fucose mutarotase | EC382_RS15345 | Not Available | Negative | 3214100 - 3214522 | 15474.0 |
| l-fuculokinase | EC382_RS15350 | Not Available | Negative | 3214524 - 3215942 | 52275.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





