Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 628109 SAMN10334465-rid9467093.guided.203 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1348096 bp
Thymine Count
1334145 bp
Guanine Count
1348628 bp
Cytosine Count
1382533 bp
Genome Length
5442379 bp
Protein-coding Genes
4885 genes
Non-Coding Genes
342 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escs/yscs/hrcs family type iii secretion system export apparatus protein | EC382_RS09920 | Not Available | Positive | 2103398 - 2103658 | 9430.85 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | EC382_RS09925 | Not Available | Positive | 2103660 - 2104427 | 28194.8 |
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | EC382_RS09930 | Not Available | Positive | 2104436 - 2105548 | 43024.9 |
| invasion protein | EC382_RS09935 | Not Available | Negative | 2105619 - 2105912 | 11117.3 |
| helix-turn-helix transcriptional regulator | EC382_RS09940 | Not Available | Negative | 2105914 - 2106414 | 19157.1 |
| prgh/eprh family type iii secretion apparatus protein | EC382_RS09945 | Not Available | Positive | 2106672 - 2107853 | 45164.6 |
| type iii secretion system needle complex protein | EC382_RS09950 | Not Available | Positive | 2107867 - 2108106 | 9038.44 |
| hypothetical protein | EC382_RS09955 | Not Available | Positive | 2108126 - 2108458 | 12299.7 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | EC382_RS09960 | Not Available | Positive | 2108455 - 2109189 | 27623.7 |
| type iii secretion apparatus protein orga/mxik | EC382_RS09965 | Not Available | Positive | 2109205 - 2109786 | 22721.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





