Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 628109 SAMN10334465-rid9467093.guided.203 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1348096 bp
Thymine Count
1334145 bp
Guanine Count
1348628 bp
Cytosine Count
1382533 bp
Genome Length
5442379 bp
Protein-coding Genes
4885 genes
Non-Coding Genes
342 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase formation protein hypd | EC382_RS08660 | Not Available | Positive | 1827137 - 1828258 | 41357.7 |
| hydrogenase maturation carbamoyl dehydratase hype | EC382_RS08665 | Not Available | Positive | 1828255 - 1829265 | 35156.6 |
| formate hydrogenlyase transcriptional activator flha | EC382_RS08670 | Not Available | Positive | 1829339 - 1831417 | 78415.4 |
| transporter | EC382_RS08675 | Not Available | Positive | 1831462 - 1831890 | 14508.6 |
| nitrous oxide-stimulated promoter family protein | EC382_RS08680 | Not Available | Negative | 1831929 - 1832273 | 13577.8 |
| dna mismatch repair protein muts | EC382_RS08685 | Not Available | Positive | 1832560 - 1835121 | 95333.6 |
| protein-serine/threonine phosphatase | EC382_RS08690 | Not Available | Positive | 1835227 - 1835883 | 25052.9 |
| hypothetical protein | EC382_RS08695 | Not Available | Negative | 1835924 - 1836160 | 9180.06 |
| ubid family decarboxylase | EC382_RS08700 | Not Available | Negative | 1836171 - 1837598 | 52387.8 |
| ubix family flavin prenyltransferase | EC382_RS08705 | Not Available | Negative | 1837598 - 1838191 | 21445.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





