Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203 is a Gram-negative, rod-shaped bacterium characterized by its mobility and presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, categorizing it as mesophilic. This strain is host-associated, displaying a biotic relationship characterized as free-living. It is known to inhabit a variety of hosts, including Homo sapiens, Gallus gallus, Bos taurus, and numerous other species across multiple taxa such as mammals, birds, and even some plants like Solanum lycopersicum and Brassica oleracea var. italica. This extensive range of hosts indicates the ecological versatility of strain 628109. E. coli strain 628109 is associated with a wide spectrum of health effects, particularly in humans, where it is linked to urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and severe conditions such as hemolytic uremic syndrome (HUS). Its pathogenicity is notably significant, contributing to various clinical manifestations, including peritonitis, septicemia, and foodborne infections. The strain’s ability to cause a variety of diseases highlights its potential impact on public health and underscores the importance of monitoring and understanding its behavior in different ecological contexts. This multi-host capability not only facilitates its persistence in diverse environments but also raises concerns regarding zoonotic transmission and the emergence of antibiotic resistance, emphasizing the need for continued research and surveillance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 628109 SAMN10334465-rid9467093.guided.203

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203,

Gene Summary

Adenine Count

1348096 bp

Thymine Count

1334145 bp

Guanine Count

1348628 bp

Cytosine Count

1382533 bp

Genome Length

5442379 bp

Protein-coding Genes

4885 genes

Non-Coding Genes

342 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutamate--cysteine ligaseEC382_RS08010Not AvailablePositive1684749 - 168586741660.6
duf1158 domain-containing proteinEC382_RS08015Not AvailablePositive1685933 - 16861819403.99
mmcq/yjbr family dna-binding proteinEC382_RS08020Not AvailablePositive1686246 - 168661414051.1
oxygen-insensitive nad(p)h nitroreductaseEC382_RS08025Not AvailablePositive1686708 - 168736123860.3
mechanosensitive ion channel family proteinEC382_RS08030Not AvailablePositive1687619 - 168886646605.5
phenylalanine transporterEC382_RS08035Not AvailableNegative1688934 - 169031050630.3
cu(+)/ag(+) efflux rnd transporter permease subunit cusaEC382_RS08040Not AvailableNegative1690412 - 1693555114746.0
cu(+)/ag(+) efflux rnd transporter periplasmic adaptor subunit cusbEC382_RS08045Not AvailableNegative1693567 - 169479044470.5
cu(+)/ag(+) efflux rnd transporter periplasmic metallochaperone cusfEC382_RS08050Not AvailableNegative1694806 - 169513812237.8
cu(+)/ag(+) efflux rnd transporter outer membrane channel cuscEC382_RS08055Not AvailableNegative1695162 - 169654450643.8

Displaying genes 1791 – 1800 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total