Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 628109 (SAMN10334465-rid9467093.guided.203) is a Gram-negative, rod-shaped bacterium that typically exhibits a cell arrangement of singles and pairs. This strain thrives optimally at a temperature of 37.0°C, which aligns with the physiological conditions of its host-associated habitat. As a facultative anaerobe, E. coli strain 628109 possesses the metabolic versatility to grow in both the presence and absence of oxygen, enabling it to adapt to varying conditions within its host environment. The Gram-negative nature of this strain indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is characteristic of many Enterobacteriaceae family members. The ability to form pairs and singles may facilitate specific interactions within microbial communities or during colonization of host tissues. Furthermore, the facultative anaerobic capability allows E. coli strain 628109 to occupy niches that may fluctuate in oxygen availability, potentially influencing its role in the microbiome dynamics and overall host health. This strain's association with host environments suggests a potential for interactions with host immune responses and microbiome composition, which may provide insights into its ecological roles in maintaining host homeostasis or modulating gut health. Understanding the traits of E. coli strain 628109 may contribute to broader research on the functional diversity and adaptability of gut-associated microorganisms.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli strain 628109 SAMN10334465-rid9467093.guided.203

Accession NumberRVJZ00000000.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4885 genes

Non-Coding Genes

342 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+875937 - 875949Not Available
Sulfur transfer protein, dsrcEC382_RS04090Not Available-888107 - 88843612411.0
ftsh protease modulator yccaEC382_RS04095Not Available-888527 - 88918623364.3
Integrase proteinEC382_RS04100Not Available-889594 - 89061338804.9
duf4224 domain-containing proteinEC382_RS04105Not Available-890582 - 8908339503.49
Exodeoxyribonuclease viiiEC382_RS04110Not Available-890900 - 89333890339.1
duf1482 family proteinEC382_RS04115Not Available-893431 - 8936196761.29
cell division inhibitorEC382_RS04120Not Available-893616 - 8938047005.52
Regulatory protein rhaEC382_RS04125Not Available-893815 - 89466931500.2
Hypothetical proteinEC382_RS04130Not Available-895188 - 8953405599.61

Displaying genes 1 – 10 of 5228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites