Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | D4M06_RS02520 | Not Available | Negative | 558741 - 560477 | 63163.3 |
| secretion protein hlyd | D4M06_RS02525 | Not Available | Negative | 560470 - 561468 | 36418.9 |
| dna-binding transcriptional regulator cecr | D4M06_RS02530 | Not Available | Negative | 561468 - 562139 | 25018.1 |
| atp-dependent rna helicase rhle | D4M06_RS02535 | Not Available | Positive | 562368 - 563735 | 50049.5 |
| type iii secretion system effector espx2 | D4M06_RS02540 | Not Available | Positive | 564343 - 566355 | 76850.2 |
| atp-dependent dna helicase ding | D4M06_RS02545 | Not Available | Positive | 566639 - 568789 | 81463.9 |
| dna-binding protein ybib | D4M06_RS02550 | Not Available | Positive | 568817 - 569779 | 35186.9 |
| malate/lactate/ureidoglycolate dehydrogenase | D4M06_RS02555 | Not Available | Positive | 569920 - 571005 | 38896.3 |
| duf1471 domain-containing protein | D4M06_RS02560 | Not Available | Negative | 571234 - 571494 | 8538.17 |
| c4-type zinc finger protein ybii | D4M06_RS02565 | Not Available | Negative | 571759 - 572025 | 9818.45 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




