Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein ypjd | D4M06_RS23355 | Not Available | Positive | 4877283 - 4878149 | 32131.5 |
| hlyc/corc family transporter | D4M06_RS23360 | Not Available | Positive | 4878171 - 4879457 | 48075.3 |
| nucleotide exchange factor grpe | D4M06_RS23365 | Not Available | Negative | 4879512 - 4880105 | 21813.1 |
| nad(+) kinase | D4M06_RS23370 | Not Available | Positive | 4880228 - 4881106 | 32598.3 |
| dna repair protein recn | D4M06_RS23375 | Not Available | Positive | 4881192 - 4882853 | 61485.2 |
| outer membrane protein assembly factor bame | D4M06_RS23380 | Not Available | Positive | 4883002 - 4883343 | 12302.8 |
| rnfh family protein | D4M06_RS23385 | Not Available | Negative | 4883405 - 4883695 | 10790.0 |
| type ii toxin-antitoxin system toxin rata | D4M06_RS23390 | Not Available | Negative | 4883685 - 4884161 | 17743.7 |
| ssra-binding protein smpb | D4M06_RS23395 | Not Available | Positive | 4884293 - 4884775 | 18270.1 |
| Tmrna,resume consensus sequence (at 83): aatagtcgcaaacgacga | Not Available | Not Available | Positive | 4884990 - 4885352 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




