Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 593596 SAMN10057753-rid9463433.guided.151 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1370210 bp
Thymine Count
1359659 bp
Guanine Count
1361880 bp
Cytosine Count
1378938 bp
Genome Length
5488722 bp
Protein-coding Genes
4966 genes
Non-Coding Genes
365 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | D4M06_RS22120 | Not Available | Negative | 4636932 - 4637192 | 9687.8 |
| type i toxin-antitoxin system hok family toxin | D4M06_RS22125 | Not Available | Positive | 4638243 - 4638404 | 6092.56 |
| hypothetical protein | D4M06_RS22130 | Not Available | Positive | 4638578 - 4639150 | 22114.0 |
| copg family transcriptional regulator | D4M06_RS22135 | Not Available | Negative | 4639168 - 4639338 | 6341.6 |
| p-loop ntpase | D4M06_RS22140 | Not Available | Negative | 4639526 - 4640191 | 24592.6 |
| type vi secretion system tip protein vgrg | D4M06_RS22145 | Not Available | Negative | 4640356 - 4640965 | 23424.8 |
| hcp family type vi secretion system effector | D4M06_RS22150 | Not Available | Negative | 4641175 - 4641693 | 19256.8 |
| type vi secretion system contractile sheath small subunit | D4M06_RS22155 | Not Available | Positive | 4642390 - 4642890 | 18070.5 |
| hypothetical protein | D4M06_RS22160 | Not Available | Positive | 4642925 - 4643149 | 8411.01 |
| type vi secretion system contractile sheath large subunit | D4M06_RS22165 | Not Available | Positive | 4643200 - 4644591 | 52563.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




